Stokenchurch is not mentioned by name in the Domesday Survey, but it is assumed by VCH to have been included in the 20 hides held by Miles Crispin in the manor of Aston Rowant (Oxfordshire), that had been held by Wulfstan before the Conquest. As such it belonged to the Honour of Wallingford by the 13thc and later to the Honour of Ewelme. In the 13thc the church was a chapelry of Aston Rowant, and had been given along with the mother church to Wallingford Priory, which kept it until it was dissolved in 1524.