The Domesday Survey of 1086 records that land in Littleton was held by Hugh de Port. No church was mentioned. However, Littleton is thought to have been one of nine churches recorded under Chilcomb, in the hands of the Bishop of Winchester. It was granted by Bishop Henry of Blois to the Priory of St Swithun, Winchester.
The N aisle, with the vestry at its E end, was added in 1885-86 by T. E. Williams. The gallery was erected in 1994.
Around 1910 the dedication of the church reverted to St Catherine (having been St Mary Magdalene).